A spokesperson said the animal was unharmed and"left the rail corridor by itself".
Police first received a call at 5.25am reporting a deer in the Anzac Bridge breakdown lane at the Allen Street off-ramp in Pyrmont.
After an unsuccessful attempt to trap the deer,police sought specialist assistance from the RSPCA,a spokesperson said.
A caller to Ben Fordham's breakfast show on 2GB said he saw a van bump the deer on Allen Street.
About 7.30am,a caller to the show said she had seen the deer on Regent Street,heading towards Central Station.
Stephen Oates told theHerald he also saw the deer about 10 minutes later,while on a train heading south from Central.
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"It was near some construction work just below Prince Alfred Park,I believe,"he said.
Earlier in the morning,the deer had been reported by a caller to Luke Grant's show on 2GB,who said he had seen the animal around Harris Street.
The Transport Management Centre urged motorists to exercise caution,after receiving reports the deer had been moving in the Pyrmont area early in the morning.
"It was last seen jumping a fence and hasn't been seen since,"they said.
It comes after two deer were seen in Sydney's inner west this month.
They were seen running through Leichhardt,Annandale and Balmain by multiple members of the public.
One of the deer was euthanised by the RSPCA after it was deemed to be in ill health having become distressed in the backyard of a Leichhardt unit complex. However,the other deer remained on the loose.
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